title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Microglia_M {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/MA_HC_Microglia_M.RData")
```ENSG00000018280
Statistics of ENSG00000018280 meta-analisys
kable(sig.genes.df['ENSG00000018280',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000018280 | SLC11A1 | -2.190282 | -1.553192 | -0.9161014 | 1.8e-06 | 1.864642 | 0.393639 | 0.325052 | 0 | 0 | 1 | 0.000937 | 0.0092257 | 3.028253 | 3 | 2 | GSE163577 | 0.3824906 | Study43,GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000018280_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000018280_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000018280_INFLUENCE.png")
ENSG00000023171
Statistics of ENSG00000023171 meta-analisys
kable(sig.genes.df['ENSG00000023171',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000023171 | GRAMD1B | 1.047095 | 1.467872 | 1.888649 | 0 | 0.6383406 | 0.7267518 | 0.214686 | 0 | 0 | 1 | 0 | 1e-07 | 7.84596 | 3 | 3 | GSE163577 | 0.4524724 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000023171_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000023171_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000023171_INFLUENCE.png")
ENSG00000054690
Statistics of ENSG00000054690 meta-analisys
kable(sig.genes.df['ENSG00000054690',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000054690 | PLEKHH1 | 0.2549608 | 0.3939302 | 0.5328996 | 0 | 0.5312807 | 0.7667148 | 0.070904 | 0 | 0 | 1 | 2.25e-05 | 0.0002218 | 4.647241 | 3 | 2 | GSE163577 | 0.4422956 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000054690_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000054690_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000054690_INFLUENCE.png")
ENSG00000066032
Statistics of ENSG00000066032 meta-analisys
kable(sig.genes.df['ENSG00000066032',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000066032 | CTNNA2 | 0.6607448 | 0.9599523 | 1.25916 | 0 | 1.729492 | 0.4211586 | 0.1526596 | 0 | 0 | 1 | 5e-07 | 4.8e-06 | 6.313021 | 3 | 3 | GSE163577 | 0.384037 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000066032_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000066032_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000066032_INFLUENCE.png")
ENSG00000070214
Statistics of ENSG00000070214 meta-analisys
kable(sig.genes.df['ENSG00000070214',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000070214 | SLC44A1 | 1.122479 | 1.510349 | 1.898219 | 0 | 0.4657604 | 0.7922485 | 0.1978965 | 0 | 0 | 1 | 0 | 0 | 10.088 | 3 | 3 | GSE163577 | 0.4564712 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000070214_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000070214_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000070214_INFLUENCE.png")
ENSG00000102763
Statistics of ENSG00000102763 meta-analisys
kable(sig.genes.df['ENSG00000102763',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000102763 | VWA8 | 0.5764711 | 0.8540113 | 1.131552 | 0 | 0.2774708 | 0.8704583 | 0.1416048 | 0 | 0 | 1 | 1.9e-06 | 1.89e-05 | 5.716753 | 3 | 3 | GSE163577 | 0.4413477 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000102763_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000102763_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000102763_INFLUENCE.png")
ENSG00000109458
Statistics of ENSG00000109458 meta-analisys
kable(sig.genes.df['ENSG00000109458',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000109458 | GAB1 | 0.8859425 | 1.32892 | 1.771898 | 0 | 1.309454 | 0.5195839 | 0.2260132 | 0 | 0 | 1 | 4.4e-06 | 4.29e-05 | 5.361196 | 3 | 3 | GSE163577 | 0.3930732 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000109458_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000109458_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000109458_INFLUENCE.png")
ENSG00000112561
Statistics of ENSG00000112561 meta-analisys
kable(sig.genes.df['ENSG00000112561',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000112561 | TFEB | 0.5223298 | 0.7173041 | 0.9122784 | 0 | 0.8193382 | 0.6638699 | 0.0994785 | 0 | 0 | 1 | 0 | 0 | 8.927902 | 3 | 2 | GSE163577 | 0.4354876 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000112561_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000112561_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000112561_INFLUENCE.png")
ENSG00000147488
Statistics of ENSG00000147488 meta-analisys
kable(sig.genes.df['ENSG00000147488',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000147488 | ST18 | 0.7746779 | 1.26105 | 1.747422 | 4e-07 | 2.014751 | 0.3651761 | 0.2481535 | 0.0064238 | 0.7321562 | 1.007376 | 0.0002643 | 0.0026022 | 3.577907 | 3 | 2 | Study43,GSE163577 | 0.2689611 | Study43,GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000147488_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000147488_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000147488_INFLUENCE.png")
ENSG00000150672
Statistics of ENSG00000150672 meta-analisys
kable(sig.genes.df['ENSG00000150672',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000150672 | DLG2 | 1.146903 | 1.889427 | 2.63195 | 6e-07 | 0.6701404 | 0.7152879 | 0.3788456 | 0 | 0 | 1 | 0.0003605 | 0.0035497 | 3.443069 | 3 | 3 | GSE163577 | 0.494074 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000150672_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000150672_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000150672_INFLUENCE.png")
ENSG00000151150
Statistics of ENSG00000151150 meta-analisys
kable(sig.genes.df['ENSG00000151150',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000151150 | ANK3 | 0.1202879 | 0.1999778 | 0.2796677 | 9e-07 | 0.4401205 | 0.8024704 | 0.0406589 | 0 | 0 | 1 | 0.0004867 | 0.0047921 | 3.31273 | 3 | 3 | GSE163577 | 0.4248003 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000151150_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000151150_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000151150_INFLUENCE.png")
ENSG00000155886
Statistics of ENSG00000155886 meta-analisys
kable(sig.genes.df['ENSG00000155886',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000155886 | SLC24A2 | 0.6017719 | 0.8252754 | 1.048779 | 0 | 0.9846921 | 0.6111908 | 0.1140345 | 0 | 0 | 1 | 0 | 0 | 8.927902 | 3 | 2 | GSE163577 | 0.4419698 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000155886_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000155886_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000155886_INFLUENCE.png")
ENSG00000156299
Statistics of ENSG00000156299 meta-analisys
kable(sig.genes.df['ENSG00000156299',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000156299 | TIAM1 | 1.003629 | 1.639169 | 2.274709 | 4e-07 | 1.05501 | 0.5900755 | 0.324261 | 0 | 0 | 1 | 0.0002743 | 0.0027011 | 3.561717 | 3 | 2 | GSE163577 | 0.4568173 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000156299_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000156299_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000156299_INFLUENCE.png")
ENSG00000157388
Statistics of ENSG00000157388 meta-analisys
kable(sig.genes.df['ENSG00000157388',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000157388 | CACNA1D | 0.6544612 | 0.9574724 | 1.260484 | 0 | 0.3244656 | 0.8502433 | 0.1546004 | 0 | 0 | 1 | 8e-07 | 7.7e-06 | 6.107289 | 3 | 3 | GSE163577 | 0.4442831 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000157388_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000157388_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000157388_INFLUENCE.png")
ENSG00000166407
Statistics of ENSG00000166407 meta-analisys
kable(sig.genes.df['ENSG00000166407',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000166407 | LMO1 | 0.1517392 | 0.2479604 | 0.3441815 | 4e-07 | 0.5330117 | 0.7660515 | 0.0490933 | 0 | 0 | 1 | 0.0002743 | 0.0027011 | 3.561717 | 3 | 3 | GSE163577 | 0.4638238 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000166407_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000166407_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000166407_INFLUENCE.png")
ENSG00000170677
Statistics of ENSG00000170677 meta-analisys
kable(sig.genes.df['ENSG00000170677',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000170677 | SOCS6 | 0.9848853 | 1.601919 | 2.218952 | 4e-07 | 1.718315 | 0.4235187 | 0.3148186 | 0 | 0 | 1 | 0.0002643 | 0.0026022 | 3.577907 | 3 | 2 | GSE163577 | 0.4177283 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000170677_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000170677_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000170677_INFLUENCE.png")
ENSG00000182985
Statistics of ENSG00000182985 meta-analisys
kable(sig.genes.df['ENSG00000182985',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182985 | CADM1 | 0.5178375 | 0.6687282 | 0.819619 | 0 | 1.57511 | 0.4549559 | 0.0769865 | 0 | 0 | 1 | 0 | 0 | 13.70237 | 3 | 2 | Study43,GSE163577 | 0.2483313 | Study43,GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000182985_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000182985_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000182985_INFLUENCE.png")
ENSG00000184226
Statistics of ENSG00000184226 meta-analisys
kable(sig.genes.df['ENSG00000184226',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000184226 | PCDH9 | 1.34631 | 1.602619 | 1.858928 | 0 | 2.002782 | 0.3673681 | 0.1307724 | 0.0013382 | 0.1389129 | 1.001391 | 0 | 0 | 29.77629 | 3 | 3 | GSE163577,syn52293442_hc | 0.3165469 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000184226_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000184226_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000184226_INFLUENCE.png")
ENSG00000204531
Statistics of ENSG00000204531 meta-analisys
kable(sig.genes.df['ENSG00000204531',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000204531 | POU5F1 | 0.2581057 | 0.3964465 | 0.5347873 | 0 | 0.5674677 | 0.4512669 | 0.0705834 | 0 | 0 | 1 | 1.72e-05 | 0.0001693 | 4.764679 | 2 | 1 | GSE163577 | 0.5092133 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000204531_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000204531_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000204531_INFLUENCE.png")
ENSG00000244694
Statistics of ENSG00000244694 meta-analisys
kable(sig.genes.df['ENSG00000244694',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000244694 | PTCHD4 | 0.4120387 | 0.6306885 | 0.8493383 | 0 | 1.413714 | 0.4931919 | 0.1115581 | 0 | 0 | 1 | 1.52e-05 | 0.0001492 | 4.819484 | 3 | 2 | GSE163577 | 0.4447277 | GSE163577 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000244694_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000244694_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000244694_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:38:02 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2