title: "Meta-analysis of genes"
  subtitle: "Draft, 25-05-2025v6c"
  output:
    html_document:
      toc: true
      toc_float:
        collapsed: false
        smooth_scroll: false
      code_folding: hide
      number_sections: false
      theme: spacelab
  ---
  # MA_HC_Microglia_M {- .tabset .tabset-fade .tabset-pills}
  
  
  ```r
  library(dplyr)
  library(knitr)
  library(DT)
  load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/MA_HC_Microglia_M.RData")
  ```

ENSG00000018280

Statistics of ENSG00000018280 meta-analisys

kable(sig.genes.df['ENSG00000018280',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000018280 SLC11A1 -2.190282 -1.553192 -0.9161014 1.8e-06 1.864642 0.393639 0.325052 0 0 1 0.000937 0.0092257 3.028253 3 2 GSE163577 0.3824906 Study43,GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000018280_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000018280_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000018280_INFLUENCE.png")

ENSG00000023171

Statistics of ENSG00000023171 meta-analisys

kable(sig.genes.df['ENSG00000023171',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000023171 GRAMD1B 1.047095 1.467872 1.888649 0 0.6383406 0.7267518 0.214686 0 0 1 0 1e-07 7.84596 3 3 GSE163577 0.4524724 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000023171_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000023171_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000023171_INFLUENCE.png")

ENSG00000054690

Statistics of ENSG00000054690 meta-analisys

kable(sig.genes.df['ENSG00000054690',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000054690 PLEKHH1 0.2549608 0.3939302 0.5328996 0 0.5312807 0.7667148 0.070904 0 0 1 2.25e-05 0.0002218 4.647241 3 2 GSE163577 0.4422956 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000054690_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000054690_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000054690_INFLUENCE.png")

ENSG00000066032

Statistics of ENSG00000066032 meta-analisys

kable(sig.genes.df['ENSG00000066032',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000066032 CTNNA2 0.6607448 0.9599523 1.25916 0 1.729492 0.4211586 0.1526596 0 0 1 5e-07 4.8e-06 6.313021 3 3 GSE163577 0.384037 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000066032_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000066032_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000066032_INFLUENCE.png")

ENSG00000070214

Statistics of ENSG00000070214 meta-analisys

kable(sig.genes.df['ENSG00000070214',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000070214 SLC44A1 1.122479 1.510349 1.898219 0 0.4657604 0.7922485 0.1978965 0 0 1 0 0 10.088 3 3 GSE163577 0.4564712 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000070214_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000070214_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000070214_INFLUENCE.png")

ENSG00000102763

Statistics of ENSG00000102763 meta-analisys

kable(sig.genes.df['ENSG00000102763',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000102763 VWA8 0.5764711 0.8540113 1.131552 0 0.2774708 0.8704583 0.1416048 0 0 1 1.9e-06 1.89e-05 5.716753 3 3 GSE163577 0.4413477 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000102763_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000102763_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000102763_INFLUENCE.png")

ENSG00000109458

Statistics of ENSG00000109458 meta-analisys

kable(sig.genes.df['ENSG00000109458',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000109458 GAB1 0.8859425 1.32892 1.771898 0 1.309454 0.5195839 0.2260132 0 0 1 4.4e-06 4.29e-05 5.361196 3 3 GSE163577 0.3930732 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000109458_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000109458_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000109458_INFLUENCE.png")

ENSG00000112561

Statistics of ENSG00000112561 meta-analisys

kable(sig.genes.df['ENSG00000112561',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000112561 TFEB 0.5223298 0.7173041 0.9122784 0 0.8193382 0.6638699 0.0994785 0 0 1 0 0 8.927902 3 2 GSE163577 0.4354876 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000112561_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000112561_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000112561_INFLUENCE.png")

ENSG00000147488

Statistics of ENSG00000147488 meta-analisys

kable(sig.genes.df['ENSG00000147488',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000147488 ST18 0.7746779 1.26105 1.747422 4e-07 2.014751 0.3651761 0.2481535 0.0064238 0.7321562 1.007376 0.0002643 0.0026022 3.577907 3 2 Study43,GSE163577 0.2689611 Study43,GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000147488_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000147488_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000147488_INFLUENCE.png")

ENSG00000150672

Statistics of ENSG00000150672 meta-analisys

kable(sig.genes.df['ENSG00000150672',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000150672 DLG2 1.146903 1.889427 2.63195 6e-07 0.6701404 0.7152879 0.3788456 0 0 1 0.0003605 0.0035497 3.443069 3 3 GSE163577 0.494074 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000150672_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000150672_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000150672_INFLUENCE.png")

ENSG00000151150

Statistics of ENSG00000151150 meta-analisys

kable(sig.genes.df['ENSG00000151150',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000151150 ANK3 0.1202879 0.1999778 0.2796677 9e-07 0.4401205 0.8024704 0.0406589 0 0 1 0.0004867 0.0047921 3.31273 3 3 GSE163577 0.4248003 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000151150_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000151150_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000151150_INFLUENCE.png")

ENSG00000155886

Statistics of ENSG00000155886 meta-analisys

kable(sig.genes.df['ENSG00000155886',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000155886 SLC24A2 0.6017719 0.8252754 1.048779 0 0.9846921 0.6111908 0.1140345 0 0 1 0 0 8.927902 3 2 GSE163577 0.4419698 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000155886_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000155886_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000155886_INFLUENCE.png")

ENSG00000156299

Statistics of ENSG00000156299 meta-analisys

kable(sig.genes.df['ENSG00000156299',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000156299 TIAM1 1.003629 1.639169 2.274709 4e-07 1.05501 0.5900755 0.324261 0 0 1 0.0002743 0.0027011 3.561717 3 2 GSE163577 0.4568173 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000156299_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000156299_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000156299_INFLUENCE.png")

ENSG00000157388

Statistics of ENSG00000157388 meta-analisys

kable(sig.genes.df['ENSG00000157388',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000157388 CACNA1D 0.6544612 0.9574724 1.260484 0 0.3244656 0.8502433 0.1546004 0 0 1 8e-07 7.7e-06 6.107289 3 3 GSE163577 0.4442831 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000157388_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000157388_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000157388_INFLUENCE.png")

ENSG00000166407

Statistics of ENSG00000166407 meta-analisys

kable(sig.genes.df['ENSG00000166407',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000166407 LMO1 0.1517392 0.2479604 0.3441815 4e-07 0.5330117 0.7660515 0.0490933 0 0 1 0.0002743 0.0027011 3.561717 3 3 GSE163577 0.4638238 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000166407_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000166407_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000166407_INFLUENCE.png")

ENSG00000170677

Statistics of ENSG00000170677 meta-analisys

kable(sig.genes.df['ENSG00000170677',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000170677 SOCS6 0.9848853 1.601919 2.218952 4e-07 1.718315 0.4235187 0.3148186 0 0 1 0.0002643 0.0026022 3.577907 3 2 GSE163577 0.4177283 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000170677_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000170677_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000170677_INFLUENCE.png")

ENSG00000182985

Statistics of ENSG00000182985 meta-analisys

kable(sig.genes.df['ENSG00000182985',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000182985 CADM1 0.5178375 0.6687282 0.819619 0 1.57511 0.4549559 0.0769865 0 0 1 0 0 13.70237 3 2 Study43,GSE163577 0.2483313 Study43,GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000182985_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000182985_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000182985_INFLUENCE.png")

ENSG00000184226

Statistics of ENSG00000184226 meta-analisys

kable(sig.genes.df['ENSG00000184226',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000184226 PCDH9 1.34631 1.602619 1.858928 0 2.002782 0.3673681 0.1307724 0.0013382 0.1389129 1.001391 0 0 29.77629 3 3 GSE163577,syn52293442_hc 0.3165469 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000184226_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000184226_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000184226_INFLUENCE.png")

ENSG00000204531

Statistics of ENSG00000204531 meta-analisys

kable(sig.genes.df['ENSG00000204531',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000204531 POU5F1 0.2581057 0.3964465 0.5347873 0 0.5674677 0.4512669 0.0705834 0 0 1 1.72e-05 0.0001693 4.764679 2 1 GSE163577 0.5092133 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000204531_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000204531_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000204531_INFLUENCE.png")

ENSG00000244694

Statistics of ENSG00000244694 meta-analisys

kable(sig.genes.df['ENSG00000244694',])
SYMBOL lower_bound logFC upper_bound pvalue QE QEp SE tau2 I2 H2 p.adjust.fdr p.adjust.BY logFDR n.studies infl.same.sign.logFC infl.nstudies sensi.global sensi.specific
ENSG00000244694 PTCHD4 0.4120387 0.6306885 0.8493383 0 1.413714 0.4931919 0.1115581 0 0 1 1.52e-05 0.0001492 4.819484 3 2 GSE163577 0.4447277 GSE163577

Gene information

Forest plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000244694_FOREST.png")

Funnel plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000244694_FUNNEL.png")

Incluence plot

knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/M/plots/ENSG00000244694_INFLUENCE.png")

sessionInfo

date()
## [1] "Sun May 25 15:38:02 2025"
sessionInfo()
## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
## 
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
##  [1] plotly_4.10.4       DT_0.26             knitr_1.41          ggplot2_3.5.2       dplyr_1.0.10        limma_3.54.0       
##  [7] tibble_3.1.8        metafor_3.8-1       metadat_1.2-0       Matrix_1.5-3        Biobase_2.58.0      BiocGenerics_0.44.0
## 
## loaded via a namespace (and not attached):
##  [1] tidyselect_1.2.0   xfun_0.35          bslib_0.4.2        purrr_0.3.5        lattice_0.20-45    vctrs_0.6.5       
##  [7] generics_0.1.3     htmltools_0.5.4    viridisLite_0.4.1  yaml_2.3.6         utf8_1.2.2         rlang_1.1.6       
## [13] pillar_1.8.1       jquerylib_0.1.4    glue_1.6.2         withr_2.5.0        DBI_1.1.3          RColorBrewer_1.1-3
## [19] lifecycle_1.0.3    stringr_1.5.0      gtable_0.3.1       htmlwidgets_1.6.0  evaluate_0.19      labeling_0.4.2    
## [25] fastmap_1.1.0      crosstalk_1.2.0    fansi_1.0.3        highr_0.9          scales_1.4.0       cachem_1.0.6      
## [31] jsonlite_1.8.4     farver_2.1.1       png_0.1-8          digest_0.6.31      stringi_1.7.8      grid_4.2.2        
## [37] mathjaxr_1.6-0     cli_3.4.1          tools_4.2.2        magrittr_2.0.3     sass_0.4.4         lazyeval_0.2.2    
## [43] dichromat_2.0-0.1  tidyr_1.2.1        pkgconfig_2.0.3    ellipsis_0.3.2     data.table_1.14.6  assertthat_0.2.1  
## [49] rmarkdown_2.19     httr_1.4.4         rstudioapi_0.14    R6_2.5.1           nlme_3.1-161       compiler_4.2.2